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1

Standardization developments for large scale biobanks in smoking related diseases - a model system for blood sample processing and storage

Malm, Johan, Fehniger, Thomas E, Danmyr, Pia, Végvári, Ákos, Welinder, Charlotte, Lindberg, Henrik, Upton, Paul, Carter, Stephanie, Appelqvist, Roger, Sjödin, Karin, Wieslander, Elisabet, Dahlbäck, Ma

Journal:

Translational Respiratory Medicine

Year:

2013

Language:

english

File:

PDF, 624 KB

english, 2013

2

A deep learning approach to automate refinement of somatic variant calling from cancer sequencing data

Ainscough, Benjamin J., Barnell, Erica K., Ronning, Peter, Campbell, Katie M., Wagner, Alex H., Fehniger, Todd A., Dunn, Gavin P., Uppaluri, Ravindra, Govindan, Ramaswamy, Rohan, Thomas E., Griffith,

Journal:

Nature Genetics

Year:

2018

Language:

english

File:

PDF, 1.26 MB

english, 2018

3

Targeting hepatocytes from liver tissue by laser capture microdissection and proteomics expression profiling

György Marko-Varga, Magnus Berglund, Johan Malmström, Henrik Lindberg, Thomas E. Fehniger

Journal:

ELECTROPHORESIS

Year:

2003

Language:

english

File:

PDF, 483 KB

english, 2003

4

Microscale protein expression profiling during disease evolvement

György A. Marko-Varga, Thomas E. Fehniger

Journal:

Journal of Chromatography A

Year:

2004

Language:

english

File:

PDF, 792 KB

english, 2004

5

Essential tactics of tissue preparation and matrix nano-spotting for successful compound imaging mass spectrometry

Ákos Végvári, Thomas E. Fehniger, Lena Gustavsson, Anna Nilsson, Per E. Andrén, Kerstin Kenne, Johan Nilsson, Thomas Laurell, György Marko-Varga

Journal:

Journal of Proteomics

Year:

2010

Language:

english

File:

PDF, 810 KB

english, 2010

6

Drug localization in different lung cancer phenotypes by MALDI mass spectrometry imaging

György Marko-Varga, Thomas E. Fehniger, Melinda Rezeli, Balázs Döme, Thomas Laurell, Ákos Végvári

Journal:

Journal of Proteomics

Year:

2011

Language:

english

File:

PDF, 1.78 MB

english, 2011

7

Human bronchoalveolar lavage: Biofluid analysis with special emphasis on sample preparation

Amelie Plymoth, Claes-Göran Löfdahl, Ann Ekberg-Jansson, Magnus Dahlbäck, Henrik Lindberg, Thomas E. Fehniger, György Marko-Varga

Journal:

Year:

2003

Language:

english

File:

PDF, 764 KB

english, 2003

8

Identification of patients with chronic obstructive pulmonary disease (COPD) by measurement of plasma biomarkers

Saher B. Shaker, Karin A. von Wachenfeldt, Susanne Larsson, Iréne Mile, Sofia Persdotter, Magnus Dahlbäck, Per Broberg, Berend Stoel, Karen S. Bach, Marianne Hestad, Thomas E. Fehniger, Asger Dirksen

Journal:

The Clinical Respiratory Journal

Year:

2008

Language:

english

File:

PDF, 218 KB

english, 2008

9

Comparison of parasitological and immunological methods in the diagnosis of leishmaniasis in Ethiopia

Gennene Mengistu, Hannah Akuffo, Thomas E. Fehniger, Yohannese Negese, R. Nilsen

Journal:

Transactions of the Royal Society of Tropical Medicine and Hygiene

Year:

1992

Language:

english

File:

PDF, 584 KB

english, 1992

10

Quantitative single cell methods that identify cytokine and chemokine expression in dendritic cells

Karin Loré, Anna-Lena Spetz, Thomas E. Fehniger, Anders Sönnerborg, Alan L. Landay, Jan Andersson

Journal:

Journal of Immunological Methods

Year:

2001

Language:

english

File:

PDF, 1.58 MB

english, 2001

11

Biobank resources for future patient care: developments, principles and concepts

Ákos Végvári, Charlotte Welinder, Henrik Lindberg, Thomas E Fehniger, György Marko-Varga

Journal:

Journal of Clinical Bioinformatics

Year:

2011

Language:

english

File:

PDF, 828 KB

english, 2011

12

Changes in the antigenic profile of Leishmania parasites following shifts in temperature

Thomas E. Fehniger, Genene Mengistu, Amare Gessesse, Hiwot Gabre-Mariam, Hannah Akuffo

Journal:

Year:

1990

Language:

english

File:

PDF, 1.64 MB

english, 1990

13

Evaluation of excised lung gas volume measurements in animals with genetic or induced emphysema

Anne-Helene Jansson, Amir Smailagic, Anna-Maria Dutius Andersson, Catharina Zackrisson, Thomas E. Fehniger, Tim R. Stevens, Xiangdong Wang

Journal:

Respiratory Physiology & Neurobiology

Year:

2006

Language:

english

File:

PDF, 564 KB

english, 2006

14

Interaction between hammerhead ribozyme and RNA substrates measured by a surface plasmon resonance biosensor

Tommy Nyholm, Michael Andäng, Åsa Bandholtz, Catharina Maijgren, Björn Persson, Graham Hotchkiss, Thomas E. Fehniger, Sten Larsson, Lars Ährlund-Richter

Journal:

Journal of Biochemical and Biophysical Methods

Year:

2000

Language:

english

File:

PDF, 1.30 MB

english, 2000

15

Immune reconstitution in lymphoid tissue following potent antiretroviral therapy

Jan Andersson, Thomas E. Fehniger

Journal:

Clinical Immunology Newsletter

Year:

1999

Language:

english

File:

PDF, 1015 KB

english, 1999

16

Standardization and Utilization of Biobank Resources in Clinical Protein Science with Examples of Emerging Applications

Marko-Varga, György, Végvári, Ákos, Welinder, Charlotte, Lindberg, Henrik, Rezeli, Melinda, Edula, Goutham, Svensson, Katrin J., Belting, Mattias, Laurell, Thomas, Fehniger, Thomas E.

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 3.21 MB

english, 2012

17

Integrating disease knowledge and technology to deliver protein targets and biomarkers into drug discovery projects

Thomas E. Fehniger, Thomas Laurell, György Marko-Varga

Journal:

Drug Discovery Today: Technologies

Year:

2005

Language:

english

File:

PDF, 488 KB

english, 2005

18

The international effort: building the bridge for Translational Medicine: Report of the 1st International Conference of Translational Medicine (ICTM)

Xiaoming Chen, Roland Andersson, William CS Cho, David Christiani, Richard Coico, Jeffery Drazen, Markus Ege, Thomas Fehniger, Hongwei Gao, Kunlin Jin, Michael N Liebman, Elena Lopez, Giuseppe Marraro

Journal:

Clinical and Translational Medicine

Year:

2012

Language:

english

File:

PDF, 202 KB

english, 2012

19

Understanding drug uptake and binding within targeted disease micro-environments in patients: a new tool for translational medicine

György Marko-Varga, Ákos Végvári, Melinda Rezeli, Kaiu Prikk, Peeter Ross, Magnus Dahlbäck, Goutham Edula, Ruth Sepper, Thomas E Fehniger

Journal:

Clinical and Translational Medicine

Year:

2012

Language:

english

File:

PDF, 1.14 MB

english, 2012

20

Development and promotion in translational medicine: perspectives from 2012 sino-american symposium on clinical and translational medicine

Mengjia Qian, Duojiao Wu, Ena Wang, Francesco M Marincola, Wei Wang, William Rhodes, Michael Liebman, Chunxue Bai, Ching-Wan Lam, Gyorgy Marko-Varga, Thomas E Fehniger, Roland Andersson, Xiangdong Wan

Journal:

Clinical and Translational Medicine

Year:

2012

Language:

english

File:

PDF, 239 KB

english, 2012

21

Direct Demonstration of Tissue Uptake of an Inhaled Drug: Proof-of-Principle Study Using Matrix-Assisted Laser Desorption Ionization Mass Spectrometry Imaging

Fehniger, Thomas E., Végvári, Ákos, Rezeli, Melinda, Prikk, Kaiu, Ross, Peeter, Dahlbäck, Magnus, Edula, Goutham, Sepper, Ruth, Marko-Varga, György

Journal:

Analytical Chemistry

Year:

2011

Language:

english

File:

PDF, 1.06 MB

english, 2011

22

Fine Mapping the Spatial Distribution and Concentration of Unlabeled Drugs within Tissue Micro-Compartments Using Imaging Mass Spectrometry

Nilsson, Anna, Fehniger, Thomas E., Gustavsson, Lena, Andersson, Malin, Kenne, Kerstin, Marko-Varga, György, Andrén, Per E., Morty, Rory Edward

Journal:

Year:

2010

Language:

english

File:

PDF, 2.66 MB

english, 2010

23

Developments in biobanking workflow standardization providing sample integrity and stability

Malm, Johan, Fehniger, Thomas E., Danmyr, Pia, Végvári, Ákos, Welinder, Charlotte, Lindberg, Henrik, Appelqvist, Roger, Sjödin, Karin, Wieslander, Elisabet, Laurell, Thomas, Hober, Sophia, Berven, Fro

Journal:

Journal of Proteomics

Year:

2013

Language:

english

File:

PDF, 911 KB

english, 2013

24

Monitoring targeted drug delivery: a key cornerstone of precision medicine

György Marko-Varga, Thomas E Fehniger

Journal:

Journal of Translational Medicine

Year:

2012

Language:

english

File:

PDF, 76 KB

english, 2012

25

Moving towards high density clinical signature studies with a human proteome catalogue developing multiplexing mass spectrometry assay panels

Melinda Rezeli, Ákos Végvári, Thomas E Fehniger…

Journal:

Journal of Clinical Bioinformatics

Year:

2011

Language:

english

File:

PDF, 761 KB

english, 2011

26

Discovery of Biomarker Candidates within Disease by Protein Profiling: Principles and Concepts †

Marko-Varga, György, Lindberg, Henrik, Löfdahl, Claes-Göran, Jönsson, Per, Hansson, Lennart, Dahlbäck, Magnus, Lindquist, Eva, Johansson, Leif, Foster, Martyn, Fehniger, Thomas E.

Journal:

Journal of Proteome Research

Year:

2005

Language:

english

File:

PDF, 1.57 MB

english, 2005

27

International biobanking for lung cancer and COPD as the future resource for clinical protein research

Fehniger, Thomas E., Végvári, Ákos, Rezeli, Melinda, Döme, Balázs, Tímár, József, Marko-Varga, György

Journal:

EuPA Open Proteomics

Year:

2013

Language:

english

File:

PDF, 1.31 MB

english, 2013

28

Correlation Queries for Mass Spectrometry Imaging

Suits, Frank, Fehniger, Thomas E., Végvári, Ákos, Marko-Varga, György, Horvatovich, Peter

Journal:

Analytical Chemistry

Year:

2013

Language:

english

File:

PDF, 1.52 MB

english, 2013

29

Proteomics and Disease Revisited: The Challenge of Providing Proteomic Tools into Clinical Practice

Fehniger, Thomas E., Marko-Varga, György

Journal:

Journal of Proteome Research

Year:

2010

Language:

english

File:

PDF, 119 KB

english, 2010

30

Proteomics and Disease The Challenges for Technology and Discovery

Marko-Varga, György, Fehniger, Thomas E.

Journal:

Journal of Proteome Research

Year:

2004

Language:

english

File:

PDF, 797 KB

english, 2004

31

Clinical Proteomics Today

Fehniger, Thomas E., Marko-Varga, György A.

Journal:

Journal of Proteome Research

Year:

2011

Language:

english

File:

PDF, 1.22 MB

english, 2011

32

Experimental Models to Study Drug Distributions in Tissue Using MALDI Mass Spectrometry Imaging

Végvári, Ákos, Fehniger, Thomas E., Rezeli, Melinda, Laurell, Thomas, Döme, Balázs, Jansson, Bo, Welinder, Charlotte, Marko-Varga, György

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 1.14 MB

english, 2013

33

Exploring the Context of the Lung Proteome within the Airway Mucosa Following Allergen Challenge

Fehniger, Thomas E., Sato-Folatre, José-Gabriel, Malmström, Johan, Berglund, Magnus, Lindberg, Claes, Brange, Charlotte, Lindberg, Henrik, Marko-Varga, György

Journal:

Journal of Proteome Research

Year:

2004

Language:

english

File:

PDF, 1.96 MB

english, 2004

34

Linking Proteins to Disease Processes

Fehniger, Gyorgy Marko-Varga and Thomas E.

Journal:

Journal of Proteome Research

Year:

2004

Language:

english

File:

PDF, 47 KB

english, 2004

35

Feasibility Study on Measuring Selected Proteins in Malignant Melanoma Tissue by SRM Quantification

Welinder, Charlotte, Jönsson, Göran, Ingvar, Christian, Lundgren, Lotta, Baldetorp, Bo, Olsson, Håkan, Breslin, Thomas, Rezeli, Melinda, Jansson, Bo, Laurell, Thomas, Fehniger, Thomas E., Wieslander,

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 2.04 MB

english, 2014

36

Queries of MALDI-imaging global datasets identifying ion mass signatures associated with tissue compartments

Fehniger, Thomas E., Suits, Frank, Végvári, Ákos, Horvatovich, Peter, Foster, Martyn, Marko-Varga, György

Journal:

Year:

2014

Language:

english

File:

PDF, 1.87 MB

english, 2014

37

Biorepository Regulatory Frameworks: Building Parallel Resources That Both Promote Scientific Investigation and Protect Human Subjects

Marko-Varga, György, Baker, Mark S., Boja, Emily S., Rodriguez, Henry, Fehniger, Thomas E.

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 271 KB

english, 2014

38

Analytical Validation Considerations of Multiplex Mass-Spectrometry-Based Proteomic Platforms for Measuring Protein Biomarkers

Boja, Emily S., Fehniger, Thomas E., Baker, Mark S., Marko-Varga, György, Rodriguez, Henry

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 492 KB

english, 2014

39

Four Areas of Engagement Requiring Strengthening in Modern Proteomics Today

Fehniger, Thomas E., Boja, Emily S., Rodriguez, Henry, Baker, Mark S., Marko-Varga, György

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 3.68 MB

english, 2014

40

Localization of sunitinib in in vivo animal and in vitro experimental models by MALDI mass spectrometry imaging

Connell, James J., Sugihara, Yutaka, Török, Szilvia, Döme, Balázs, Tóvári, József, Fehniger, Thomas E., Marko-Varga, György, Végvári, Ákos

Journal:

Analytical and Bioanalytical Chemistry

Year:

2015

Language:

english

File:

PDF, 2.49 MB

english, 2015

41

Low Levels of Perforin Expression in CD8 + T Lymphocyte Granules in Lymphoid Tissue during Acute Human Immunodeficiency Virus Type 1 Infection

Andersson, Jan, Kinloch, Sabine, Sönnerborg, Anders, Nilsson, Jakob, Fehniger, Thomas E., Spetz, Anna‐Lena, Behbahani, Homira, Goh, Li‐Ean, McDade, Hugh, Gazzard, Brian, Stellbrink, Hans, Cooper, Davi

Journal:

The Journal of Infectious Diseases

Year:

2002

Language:

english

File:

PDF, 305 KB

english, 2002

42

Targeted Suppression of Cytokine Production in Monocytes but Not in T Lymphocytes by a Tetravalent Guanylhydrazone (CNI‐1493)

Björk, Lars, Tracey, Kevin J., Ulrich, Peter, Bianchi, Marina, Cohen, Pamela S., Åkerlund, Karin, Fehniger, Thomas E., Andersson, Ulf, Andersson, Jan

Journal:

The Journal of Infectious Diseases

Year:

1997

Language:

english

File:

PDF, 548 KB

english, 1997

43

Semi-automated biobank sample processing with a 384 high density sample tube robot used in cancer and cardiovascular studies

Malm, Johan, Lindberg, Henrik, Erlinge, David, Appelqvist, Roger, Yakovleva, Maria, Welinder, Charlotte, Steinfelder, Erik, Fehniger, Thomas E, Marko-Varga, György

Journal:

Clinical and Translational Medicine

Year:

2015

Language:

english

File:

PDF, 1.26 MB

english, 2015

44

[American Thoracic Society American Thoracic Society 2011 International Conference, May 13-18, 2011 • Denver Colorado - ()] A64. MUCINS AND CILIA - Expression Of MUC5B By Subpopulation Of Alveolar Macrophages In Chronic Smokers And COPD Patients

Prikk, Kaiu, Sepper, Ruth, Marran, Sirje, Fehniger, Thomas

Year:

2011

Language:

english

File:

PDF, 18 KB

english, 2011

45

Activation of the TGF- β /Activin-Smad2 Pathway during Allergic Airway Inflammation

Rosendahl, Alexander, Checchin, Daniella, Fehniger, Thomas E., ten Dijke, Peter, Heldin, Carl-Henrik, Sideras, Paschalis

Journal:

American Journal of Respiratory Cell and Molecular Biology

Year:

2001

Language:

english

File:

PDF, 515 KB

english, 2001

46

A prospective study to evaluate diffusion weighted MRI imaging in the detection of peritoneal carcinomatosis in suspected gynecologic malignancies

Fehniger, J., Thomas, S., Liao, C., Lengyel, E., Tenney, M., Oto, A., Yamada, S.D.

Journal:

Gynecologic Oncology

Year:

2015

Language:

english

File:

PDF, 122 KB

english, 2015

47

A prospective study evaluating diffusion weighted magnetic resonance imaging (DW-MRI) in the detection of peritoneal carcinomatosis in suspected gynecologic malignancies

Fehniger, Julia, Thomas, Stephen, Lengyel, Ernst, Liao, Chuanhong, Tenney, Meaghan, Oto, Aytekin, Yamada, S. Diane

Journal:

Gynecologic Oncology

Year:

2016

Language:

english

File:

PDF, 1.08 MB

english, 2016

48

Early reduction of immune activation in lymphoid tissue following highly active HIV therapy

Andersson, Jan, Fehniger, Thomas E., Patterson, Bruce K., Pottage, John, Agnoli, Michelle, Jones, Paul, Behbahani, Homira, Landay, Alan

Journal:

Year:

1998

Language:

english

File:

PDF, 524 KB

english, 1998

49

Perforin is not co-expressed with granzyme A within cytotoxic granules in CD8 T lymphocytes present in lymphoid tissue during chronic HIV infection

Andersson, Jan, Behbahani, Homira, Lieberman, Judy, Connick, Elizabeth, Landay, Alan, Patterson, Bruce, Sönnerborg, Anders, Loré, Karin, Uccinif, Stefania, Fehniger, Thomas E.

Journal:

Year:

1999

Language:

english

File:

PDF, 14.72 MB

english, 1999

50

Localization of tamoxifen in human breast cancer tumors by MALDI mass spectrometry imaging

Végvári, Ákos, Shavkunov, Alexander S., Fehniger, Thomas E., Grabau, Dorthe, Niméus, Emma, Marko-Varga, György

Journal:

Clinical and Translational Medicine

Year:

2016

Language:

english

File:

PDF, 4.48 MB

english, 2016